Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Small code fixes in panpipes_ingest #144

Merged
merged 2 commits into from
Nov 29, 2023
Merged

Small code fixes in panpipes_ingest #144

merged 2 commits into from
Nov 29, 2023

Conversation

SarahOuologuem
Copy link
Collaborator

Fixed two small bugs in panpipes_ingest.
The mdata wasn't updated in run_scanpyQC_rna.py, so no QC metrics were saved in _unfilt.h5mu.
Added @active_if(PARAMS["scr_run"]), so that scrublet is only run when it is specified in the yaml to run it.

@bio-la bio-la merged commit 9552c31 into main Nov 29, 2023
@SarahOuologuem SarahOuologuem deleted the sarah_ingest branch December 5, 2023 13:42
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants